By mixing dried viral DNA with water, then adding different restriction enzymes, it can be cut into various lengths.  Gel electrophoresis is then used to separate the pieces.

After rehydrating the DNA it is added to the tubes of enzymes and incubated for 45 minutes.

Meanwhile agarose gel is poured into trays and allowed to set.

The DNA has a loading dye added before putting it into the wells in the gel.

After running an electric current through it for seven hours the fragments of DNA are separated.

Results Example

Year 13 Biology students' prep

 The table below gives the sizes of the major DNA fragments produced by the enzymes you used.

The unit is base pairs.

EcoRI

HindIII

BamHI

21 226

23 130

16 841

5 643 & 5 804 & 4 878

9 416

6 527 & 5 626 & 5 505

3 530

6 557

 

 

4 361

 

 

2 125

 

The control (uncut DNA) was put in the left hand well.  All the samples with restriction enzymes added had some uncut DNA remaining so the first band in each case contains this.  It has a little over 25 000 base pairs. Use this table to identify which restriction enzyme was used to cut the DNA in each of the other three wells in the example above.  Print out or copy the photo of the results, draw around each band, and label it showing the size of the DNA fragment or fragments it contains.  Indicate the restriction enzyme used in each case.